Class SpeciesAccumulationCurve

Inheritance
Object
SpeciesAccumulationCurve
Inherited Members
Namespace: AnalysisPrograms
Assembly: AnalysisPrograms.dll
Syntax
public class SpeciesAccumulationCurve

Fields

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CommandName

Declaration
public const string CommandName = "SpeciesAccumulationCurve"
Field Value
Type Description
String

Methods

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AdjustForChorusBias(Double[], Double)

Declaration
public static double[] AdjustForChorusBias(double[] values, double chorusBiasWeight)
Parameters
Type Name Description
Double[] values
Double chorusBiasWeight
Returns
Type Description
Double[]
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CalculateBGNoiseSamplingBias(Double[], Double, Double, Double)

Declaration
public static double[] CalculateBGNoiseSamplingBias(double[] bgArray, double bgThreshold, double bgVarianceThreshold, double noiseBias)
Parameters
Type Name Description
Double[] bgArray
Double bgThreshold
Double bgVarianceThreshold
Double noiseBias
Returns
Type Description
Double[]
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Execute()

Declaration
public static void Execute()
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Execute(SpeciesAccumulationCurve.Arguments)

EXECUTABLE extracts acoustic richness indices from a single recording.

Declaration
public static void Execute(SpeciesAccumulationCurve.Arguments arguments)
Parameters
Type Name Description
SpeciesAccumulationCurve.Arguments arguments
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GetAccumulationCurve(Byte[,], Int32[])

Declaration
public static int[] GetAccumulationCurve(byte[, ] occurenceMatrix, int[] sampleOrder)
Parameters
Type Name Description
Byte[,] occurenceMatrix
Int32[] sampleOrder
Returns
Type Description
Int32[]
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GetRankOrder(DataTable)

Declaration
public static int[] GetRankOrder(DataTable table)
Parameters
Type Name Description
DataTable table
Returns
Type Description
Int32[]
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GetRankOrder(String, Int32)

returns the row indices for a single column of an array, ranked by value. Used to order the sampling of an acoustic recording split into one minute chunks.

Declaration
public static int[] GetRankOrder(string fileName, int colNumber)
Parameters
Type Name Description
String fileName
Int32 colNumber
Returns
Type Description
Int32[]

array of index locations in descending order.
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GetRankOrder1(String)

Declaration
public static int[] GetRankOrder1(string fileName)
Parameters
Type Name Description
String fileName
Returns
Type Description
Int32[]
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OptimsedRankOrder(DataTable, Byte[,], Int32)

Declaration
public static void OptimsedRankOrder(DataTable table, byte[, ] callMatrix, int speciesCount)
Parameters
Type Name Description
DataTable table
Byte[,] callMatrix
Int32 speciesCount
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RandomSampleFromRankOrder(Int32[], Int32)

Declaration
public static int[] RandomSampleFromRankOrder(int[] rankOrder, int seed)
Parameters
Type Name Description
Int32[] rankOrder
Int32 seed
Returns
Type Description
Int32[]
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READ_CALL_OCCURENCE_CSV_DATA(String)

Declaration
public static Tuple<List<string>, List<string>, byte[, ]> READ_CALL_OCCURENCE_CSV_DATA(string occurenceFile)
Parameters
Type Name Description
String occurenceFile
Returns
Type Description
Tuple<List<String>, List<String>, Byte[,]>

Extension Methods